bd573 (bd573) petAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd573	bd_26x41	(bd573) petA	20265	21209	-	petA

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0065

Most Highly Correlated Transcripts

ThpsCp042 (petA) cytochrome f 1	ThpsCp081 (secA) preprotein translocase subunit SecA 0.9711	ThpsCp135 (secA) preprotein translocase subunit SecA 0.9711	ThpsCp112 (rps5) ribosomal protein S5 0.9501	ThpsCp023 (ycf42) putative peroxiredoxin ycf42 0.9499	ThpsCp111 (rpl18) ribosomal protein L18 0.9451
bd1013 (bd1013) PRX_Typ2cys 0.9327	ThpsCp123 (tufA) elongation factor Tu 0.9298	bd1563 (bd1563) atpB 0.9254	ThpsCp041 (tatC) Sec-independent translocase component C 0.9254

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
petA		cytochrome f	cl03168	494.053	2.43E-176	1 - 314	specific	176978
Apocytochr_F_C superfamily		Apocytochrome F, C-terminal; This is a sub-family of cytochrome C. See pfam00034.	-	494.053	2.43E-176	1 - 314	superfamily	261620

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	298340	Not available	Not available	ATCG00540.1	Not available

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

Not available -

Add comment

Log in to post comments