bd1563 (bd1563) atpB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd1563 bd_26x41 (bd1563) atpB 21237 23999 - atpB

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0065

Most Highly Correlated Transcripts

ThpsCp041

(tatC) Sec-independent translocase component C
1

ThpsCp039

(atpB) ATP synthase CF1 beta subunit
0.9838

ThpsCp040

(atpE) ATP synthase CF1 epsilon subunit
0.9701

ThpsCp007

(psbX) photosystem II protein X
0.9609

ThpsCt001

(trnM(cau))
0.9605

bd2088

(bd2088) rbcL
0.9537

ThpsCp080

(rpl27) ribosomal protein L27
0.9531

ThpsCp136

(rpl27) ribosomal protein L27
0.9531

ThpsCt023

(trnQ(uug))
0.9526

bd1318

(bd1318) atpF
0.9495

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma... cl17233 563.776 0 80 - 360 specific 238553
RecA-like_NTPases superfamily RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and... - 563.776 0 80 - 360 superfamily 266574
ATP-synt_ab_C superfamily ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta chain, C terminal domain. - 130.855 1.64E-36 368 - 474 superfamily 249758
ATP-synt_ab_C superfamily ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta chain, C terminal domain. - 130.855 1.64E-36 368 - 474 superfamily 249758
ATP-synt_ab_N superfamily ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and... - 80.6481 7.69E-19 10 - 78 superfamily 251583
ATP-synt_ab_N superfamily ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and... - 80.6481 7.69E-19 10 - 78 superfamily 251583
atpB ATP synthase CF1 beta subunit - 1029.6 0 2 - 474 multi-dom 214349

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54086 PHATRDRAFT_54086 267742 233619 445169 Cre17.g698000.t1.2 AT5G08690.1 355840

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

Not available -

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