PHATRDRAFT_20740 rna binding motif protein 19 (RRM3_RBM19_RRM2_MRD1)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_20740 chr_10 rna binding motif protein 19 (RRM3_RBM19_RRM2_MRD1) 80318 82873 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0201

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0237
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM3_RBM19_RRM2_MRD1 RNA recognition motif 3 in RNA-binding protein 19 (RBM19) and RNA recognition motif 2 found in... cl17169 132.421 2.61E-36 322 - 394 specific 240762
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 83.4195 4.20E-19 20 - 102 superfamily 266524
RRM6_RBM19_RRM5_MRD1 RNA recognition motif 6 in RNA-binding protein 19 (RBM19 or RBD-1) and RNA recognition motif 5 in... cl17169 121.568 1.55E-32 725 - 797 specific 240766
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 83.4195 4.20E-19 20 - 102 superfamily 266524
RRM4_RBM19_RRM3_MRD1 RNA recognition motif 4 in RNA-binding protein 19 (RBM19) and RNA recognition motif 3 in multiple... cl17169 121.175 1.89E-32 513 - 585 specific 240763
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 83.4195 4.20E-19 20 - 102 superfamily 266524
RRM5_RBM19_like RNA recognition motif 5 in RNA-binding protein 19 (RBM19 or RBD-1) and similar proteins; This... cl17169 105.764 6.35E-27 626 - 704 specific 240764
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 83.4195 4.20E-19 20 - 102 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 83.4195 4.20E-19 20 - 102 superfamily 266524
ELAV_HUD_SF ELAV/HuD family splicing factor; This model describes the ELAV/HuD subfamily of splicing factors... - 52.25 2.67E-07 323 - 701 multi-dom 233516

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268689 Not available 188332 299146 67175 Cre16.g685200.t1.1 AT4G19610.1 484800

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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