268689 RRM6_RBM19_RRM5_MRD1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268689 chr_4 RRM6_RBM19_RRM5_MRD1 1080208 1083122 - RRM6_RBM19_RRM5_MRD1

Synonyms

NCBI ID Ensembl Genomes exon ID
7447954 Thaps268689.2, Thaps268689.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0199
 0.24

Most Highly Correlated Transcripts

22212

COG5638
0.9523

268559

COG1084
0.9441

7265

PIN_SF superfamily
0.9434

23862

Syo1_like superfamily
0.9371

bd1667

(bd1667) Mpp10
0.9346

32374

TPR
0.9338

21082

Cupin_8 superfamily
0.9331

23106

hypothetical protein
0.933

20985

COG5593
0.932

23187

SDA1
0.9302

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM6_RBM19_RRM5_MRD1 RNA recognition motif 6 in RNA-binding protein 19 (RBM19 or RBD-1) and RNA recognition motif 5 in... cl17169 153.154 1.44E-43 764 - 839 specific 240766
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 81.1896 2.69E-18 332 - 404 superfamily 266524
RRM4_RBM19_RRM3_MRD1 RNA recognition motif 4 in RNA-binding protein 19 (RBM19) and RNA recognition motif 3 in multiple... cl17169 130.805 8.33E-36 531 - 604 specific 240763
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 81.1896 2.69E-18 332 - 404 superfamily 266524
RRM1_MRD1 RNA recognition motif 1 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and... cl17169 117.317 6.03E-31 15 - 92 specific 241009
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 81.1896 2.69E-18 332 - 404 superfamily 266524
RRM5_RBM19_like RNA recognition motif 5 in RNA-binding protein 19 (RBM19 or RBD-1) and similar proteins; This... cl17169 108.076 1.29E-27 654 - 740 specific 240764
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 81.1896 2.69E-18 332 - 404 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 81.1896 2.69E-18 332 - 404 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20740 PHATRDRAFT_20740 188332 299146 67175 Cre16.g685200.t1.1 AT4G19610.1 484800

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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