PHATRDRAFT_22677 degenerative spermatocyte homolog 1 (PLN02579)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_22677	chr_19	degenerative spermatocyte homolog 1 (PLN02579)	100359	101324	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0194

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0006	0.56	780 24000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Membrane-FADS-like superfamily		The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane...	-	391.622	2.41E-136	28 - 315	superfamily	260534
Lipid_DES superfamily		Sphingolipid Delta4-desaturase (DES); Sphingolipids are important membrane signalling molecules...	-	60.7501	1.89E-12	7 - 45	superfamily	117132
PLN02579		sphingolipid delta-4 desaturase	-	582.083	0	1 - 321	multi-dom	215316

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
32145		Not available	269456	196816	420157	Not available	AT4G04930.1	543976

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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