32145 PLN02579
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32145 chr_2 PLN02579 1087906 1089069 + PLN02579

Synonyms

NCBI ID Ensembl Genomes exon ID
7444645 Thaps32145.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0209

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0120
 0.39

Most Highly Correlated Transcripts

38608

SDR_a5
0.9154

bd1857

(bd1857) DnaJ
0.8904

bd1852

(bd1852) NA
0.8701

6122

hypothetical protein
0.8698

261608

PLN02585
0.8676

39278

ATP-synt_C
0.861

26991

GRX_GRXh_1_2_like
0.8556

31169

PRX_BCP
0.8498

268592

VDE superfamily
0.8481

34510

UAA
0.8457

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the... cl00615 436.305 6.68E-153 82 - 368 specific 239585
Membrane-FADS-like superfamily The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane... - 436.305 6.68E-153 82 - 368 superfamily 260534
PLN02579 sphingolipid delta-4 desaturase - 584.779 0 53 - 368 multi-dom 215316

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22677 PHATRDRAFT_22677 269456 196816 420157 Not available AT4G04930.1 543976

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0016491 GO:0006508 GO:0008237 GO:0008270 GO:0006636 GO:0016020 GO:0016717 GO:0016705 GO:0018585 GO:0018586 GO:0018587 GO:0018588 GO:0018589 GO:0018590 GO:0018591 GO:0018592 GO:0018593 GO:0018594 GO:0018595 GO:0018596 GO:0018597 GO:0018598 GO:0018599 GO:0018600 GO:0018601 -

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0006636

unsaturated fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016717

oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.
GO Category: 
MF

GO:0016705

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
GO Category: 
MF

GO:0018585

fluorene oxygenase activity

Details: 
Catalysis of the reaction: fluorene + 2 H+ + 2 e- + O2 = H2O + 9-fluorenol.
GO Category: 
MF

GO:0018586

mono-butyltin dioxygenase activity

Details: 
Catalysis of the reaction: butyltin + O2 + 2 H+ + 2 e- = H2O + beta-hydroxybutyltin.
GO Category: 
MF

GO:0018587

NA

Details: 
NA
GO Category: 
NA

GO:0018588

tri-n-butyltin dioxygenase activity

Details: 
Catalysis of the reaction: tri-n-butyltin + O2 + 2 H+ + 2 e- = H2O + beta-hydroxybutyldibutyltin.
GO Category: 
MF

GO:0018589

di-n-butyltin dioxygenase activity

Details: 
Catalysis of the reaction: dibutyltin + O2 + 2 H+ + 2 e- = H2O + beta-hydroxybutylbutyltin.
GO Category: 
MF

GO:0018590

methylsilanetriol hydroxylase activity

Details: 
Catalysis of the reaction: methylsilanetriol + O2 + 2 H+ + 2 e- = H2O + hydroxymethylsilanetriol.
GO Category: 
MF

GO:0018591

methyl tertiary butyl ether 3-monooxygenase activity

Details: 
Catalysis of the reaction: methyl tert-butyl ether + 1/2 O2 = tert-butyl alcohol + formaldehyde.
GO Category: 
MF

GO:0018592

4-nitrocatechol 4-monooxygenase activity

Details: 
Catalysis of the reaction: 4-nitrocatechol + O2 + 4 e- + 3 H+ = H2O + nitrite + 1,2,4-benzenetriol.
GO Category: 
MF

GO:0018593

4-chlorophenoxyacetate monooxygenase activity

Details: 
Catalysis of the reaction: 4-chlorophenoxyacetate + 1/2 O2 = glyoxylate + 4-chlorophenol.
GO Category: 
MF

GO:0018594

tert-butanol 2-monooxygenase activity

Details: 
Catalysis of the reaction: tert-butanol + 1/2 O2 = 2-methyl-2-hydroxy-1-propanol.
GO Category: 
MF

GO:0018595

alpha-pinene monooxygenase activity

Details: 
Catalysis of the reaction: alpha-pinene + O2 + 2 H+ + 2 e- = H2O + pinocarveol.
GO Category: 
MF

GO:0018596

dimethylsilanediol hydroxylase activity

Details: 
Catalysis of the reaction: dimethylsilanediol + O2 + 2 H+ + 2 e- = H2O + hydroxymethylmethylsilanediol.
GO Category: 
MF

GO:0018597

ammonia monooxygenase activity

Details: 
Catalysis of the oxidation of alkanes (up to C8) to alcohols and alkenes (up to C5) to epoxides and alcohols in the presence of ammonium ions.
GO Category: 
MF

GO:0018598

hydroxymethylsilanetriol oxidase activity

Details: 
Catalysis of the reaction: hydroxymethylsilanetriol + O2 + 2 H+ + 2 e- = 2 H2O + formylsilanetriol.
GO Category: 
MF

GO:0018599

2-hydroxyisobutyrate 3-monooxygenase activity

Details: 
Catalysis of the reaction: 2-hydroxyisobutyrate + 1/2 O2 = 2,3-dihydroxy-2-methyl propionate.
GO Category: 
MF

GO:0018600

alpha-pinene dehydrogenase activity

Details: 
Catalysis of the reaction: alpha-pinene + O2 + 2 H+ + 2 e- = H2O + myrtenol.
GO Category: 
MF

GO:0018601

4-nitrophenol 2-monooxygenase activity

Details: 
Catalysis of the reaction: 4-nitrophenol + H(+) + NADH + O(2) = 4-nitrocatechol + H(2)O + NAD(+).
GO Category: 
MF

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