PHATRDRAFT_51511 member ras oncogene family (Rab5_related)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_51511	chr_2	member ras oncogene family (Rab5_related)	520362	521419	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0395

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0219	0.22	180 210

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Rab5_related		Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion; The Rab5-...	cl17170	319.882	4.33E-112	15 - 177	specific	206653
Ras_like_GTPase superfamily		Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase...	-	319.882	4.33E-112	15 - 177	superfamily	266525
COG1100		GTPase SAR1 and related small G proteins [General function prediction only]	-	147.415	9.70E-44	14 - 196	multi-dom	224025

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
261381		Not available	212147	310922	459533	Cre12.g517400.t1.2	AT5G45130.1	346157

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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