261381 Rab5_related
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261381 chr_2 Rab5_related 1086424 1087238 + Rab5_related

Synonyms

NCBI ID Ensembl Genomes exon ID
7450363 Thaps261381.3, Thaps261381.1, Thaps261381.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0212

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0269
 0.41

Most Highly Correlated Transcripts

bd804

(bd804) alpha-crystallin-Hsps_p23-like superfamily
0.8543

8880

hypothetical protein
0.8419

2211

hypothetical protein
0.8416

4270

Scramblase superfamily
0.8382

25523

hypothetical protein
0.8358

3564

hypothetical protein
0.8335

10059

hypothetical protein
0.8312

6140

hypothetical protein
0.823

2319

hypothetical protein
0.8226

32459

PspA
0.8225

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab5_related Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion; The Rab5-... cl17170 323.734 8.75E-114 7 - 169 specific 206653
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 323.734 8.75E-114 7 - 169 superfamily 266525
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 148.185 3.78E-44 8 - 188 multi-dom 224025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51511 PHATRDRAFT_51511 212147 310922 459533 Cre12.g517400.t1.2 AT4G19640.1 346157

KEGG

KEGG description KEGG Pathway
Phagosome map04145

GO Terms

GO:0005525 GO:0007264 GO:0006886 GO:0015031 GO:0003924 GO:0003925 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0003925

NA

Details: 
NA
GO Category: 
NA

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