11294 XendoUThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11294	chr_19b_31	XendoU	96530	98193	-	XendoU

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451803	Thaps11294.1, Thaps11294.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0142

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0255	0.31	150 10000

Most Highly Correlated Transcripts

22850 DUF4239 0.9432	20664 hypothetical protein 0.9257	10158 hypothetical protein 0.9207	11693 tRNA_SAD superfamily 0.9057	4502 hypothetical protein 0.9046	20665 hypothetical protein 0.9045
19435 PTZ00184 0.9025	13448 Sec1 0.8997	10055 hypothetical protein 0.899	23137 hypothetical protein 0.8978

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
XendoU superfamily		Endoribonuclease XendoU; This is a family of endoribonucleases involved in RNA biosynthesis which...	-	374.27	6.00E-127	225 - 504	superfamily	255347
XendoU superfamily		Endoribonuclease XendoU; This is a family of endoribonucleases involved in RNA biosynthesis which...	-	374.27	6.00E-127	225 - 504	superfamily	255347

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_2819	PHATRDRAFT_2819	270431	53534	53158	Cre14.g631900.t1.2	AT4G17100.2	558990

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments