11453 SRPBCC superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11453 chr_20 SRPBCC superfamily 145297 147264 + SRPBCC superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448496 Thaps11453.2, Thaps11453.1, Thaps11453.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0036

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0112
 0.40

Most Highly Correlated Transcripts

bd218

(bd218) Chloroa_b-bind superfamily
0.9345

bd1820

(bd1820) Fasciclin
0.9252

bd1863

(bd1863) NA
0.9152

bd1387

(bd1387) psbE
0.9076

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9062

bd1765

(bd1765) NA
0.9023

bd624

(bd624) Glyco_transf_34 superfamily
0.8998

bd467

(bd467) Cytochrome_b_N
0.8991

bd1192

(bd1192) Acyl_ACP_Desat
0.8991

bd1378

(bd1378) atpI
0.8982

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SRPBCC superfamily START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; SRPBCC domains... - 68.0263 1.70E-13 408 - 596 superfamily 265438

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_31407 PHATRDRAFT_31407 174591 155948 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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