11615 PRK15061
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11615 chr_20 PRK15061 669124 671673 + PRK15061

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0205

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0238
 0.33

Most Highly Correlated Transcripts

23616

Peptidase_A22B superfamily
0.9379

bd1893

(bd1893) NA
0.9146

8524

pntA
0.9062

1456

(IDH1) IDH superfamily
0.9053

1417

GpcrRhopsn4 superfamily
0.8934

bd790

(bd790) ABCC_MRP_domain2
0.8914

29867

(ACS2_1) PLN02736
0.8902

3154

(Tp_HSF_1b) HSF_DNA-bind
0.885

8349

NADB_Rossmann superfamily
0.8803

10366

hypothetical protein
0.8794

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
plant_peroxidase_like superfamily Heme-dependent peroxidases similar to plant peroxidases; Along with animal peroxidases, these... - 451.683 9.42E-154 423 - 721 superfamily 260251
plant_peroxidase_like superfamily Heme-dependent peroxidases similar to plant peroxidases; Along with animal peroxidases, these... - 451.683 9.42E-154 423 - 721 superfamily 260251
PRK15061 catalase/hydroperoxidase HPI(I); Provisional - 1216.52 0 2 - 723 multi-dom 237891

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
9045 PHATR_18572 PHATR_18572 278270 254013 471186 Cre01.g045700.t1.1 Not available 479844

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004096 GO:0004601 GO:0006118 GO:0006979 GO:0004130 -

GO:0004096

catalase activity

Details: 
Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O.
GO Category: 
MF

GO:0004601

peroxidase activity

Details: 
Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
GO Category: 
MF

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0006979

response to oxidative stress

Details: 
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
GO Category: 
BP

GO:0004130

cytochrome-c peroxidase activity

Details: 
Catalysis of the reaction: 2 ferrocytochrome c + hydrogen peroxide = 2 ferricytochrome c + 2 H2O.
GO Category: 
MF

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