11700 STARTThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11700	chr_22	START	167859	171635	-	START

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449483	Thaps11700.6, Thaps11700.1, Thaps11700.5, Thaps11700.4, Thaps11700.3, Thaps11700.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0151

Most Highly Correlated Transcripts

263483 CHD 0.8881	263019 PLN02818 0.8853	21868 hypothetical protein 0.8849	11613 hypothetical protein 0.8798	914 hypothetical protein 0.8701	12094 hypothetical protein 0.8664
21124 hypothetical protein 0.8635	3660 COG5038 0.8635	8582 hypothetical protein 0.862	8762 SNF2_N 0.8595

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
START		Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins; This family includes...	cl14643	147.87	5.56E-40	667 - 883	specific	176851
SRPBCC superfamily		START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; SRPBCC domains...	-	147.87	5.56E-40	667 - 883	superfamily	265438

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43720	PHATRDRAFT_43720	240055	246498	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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