263019 PLN02818Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263019	chr_6	PLN02818	1769864	1771973	-	PLN02818

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446329	Thaps263019.5, Thaps263019.4, Thaps263019.3, Thaps263019.2, Thaps263019.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0265

Most Highly Correlated Transcripts

bd624 (bd624) Glyco_transf_34 superfamily 0.9683	bd1465 (bd1465) PKc_like superfamily 0.9193	bd894 (bd894) Peptidase_M14_like superfamily 0.9128	24855 hypothetical protein 0.9013	9792 hypothetical protein 0.8941	20971 hypothetical protein 0.8934
8582 hypothetical protein 0.8923	3660 COG5038 0.8905	5788 TFIIS_M 0.8901	24313 hypothetical protein 0.8898

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLN02818		tocopherol cyclase	cl14571	620.554	0	164 - 610	specific	215438
Tocopherol_cycl superfamily		Tocopherol cyclase; This family contains tocopherol cyclases. These enzymes are involved in the...	-	620.554	0	164 - 610	superfamily	265429

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_bd1025	PHATRDRAFT_bd1025	190405	238333	54133	Cre01.g013801.t1.2	AT4G32770.1	Not available

KEGG

KEGG description	KEGG Pathway
Biosynthesis of secondary metabolites	map01110

GO Terms

Not available -

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