16743 Peptidase_M48 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16743 chr_7 Peptidase_M48 superfamily 729512 730735 - Peptidase_M48 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449203 Thaps16743.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0451

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0053
 0.56

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.9067

19158

GRX_PICOT_like
0.901

267979

HCO3_cotransp superfamily
0.8993

18662

ADK
0.8901

260856

NBD_sugar-kinase_HSP70_actin superfamily
0.8767

1706

hypothetical protein
0.8746

13448

Sec1
0.8737

16114

PLN02350
0.8724

36007

Aldolase_II superfamily
0.8705

12899

AAA
0.8697

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_M48 superfamily Peptidase family M48; Peptidase family M48. - 109.453 6.17E-28 197 - 353 superfamily 264511

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45606 PHATRDRAFT_45606 275688 193281 Not available Cre06.g306650.t1.1 AT5G51740.1 336136

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0016020 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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