19479 PhyH superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
19479	chr_7	PhyH superfamily	486311	487354	-	PhyH superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448970	Thaps19479.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0489

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0033	0.48	0.000000021 0.013

Most Highly Correlated Transcripts

262692 0.9461	bd393 (bd393) nst superfamily 0.9056	bd1869 (bd1869) SET 0.8973	36641 Aldolase_Class_I superfamily 0.8528	25040 NA 0.8492	6028 NA 0.8331
36007 Aldolase_II superfamily 0.8317	22673 NA 0.8265	263984 SprT-like 0.826	4321 HAD_2 0.8258

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PhyH superfamily		Phytanoyl-CoA dioxygenase (PhyH); This family is made up of several eukaryotic phytanoyl-CoA...	-	91.3619	7.29E-22	46 - 286	superfamily	266621

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_7544	PHATR_7544	231864	162966	66203	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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