20613 PLPDE_III_DapDC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20613 chr_1 PLPDE_III_DapDC 372893 374742 - PLPDE_III_DapDC

Synonyms

NCBI ID Ensembl Genomes exon ID
7447659 Thaps20613.2, Thaps20613.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Most Highly Correlated Transcripts

34303

TEF1
0.9026

22293

PLN00178
0.8837

41178

hisG
0.8828

42621

HisS
0.8808

27083

eIF3_N superfamily
0.8794

36007

Aldolase_II superfamily
0.8785

268443

SAICAR_synt_Sc
0.8773

10273

zf-met2
0.875

262457

60KD_IMP
0.8724

23667

hypothetical protein
0.8714

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase;... cl00261 326.748 1.72E-107 62 - 454 specific 143501
PLPDE_III superfamily Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; The fold type III PLP-dependent enzyme... - 326.748 1.72E-107 62 - 454 superfamily 260308
PRK11165 diaminopimelate decarboxylase; Provisional - 239.425 3.23E-73 41 - 476 multi-dom 236867

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21592 PHATRDRAFT_21592 230050 34191 438904 Cre01.g050100.t1.2 AT5G11880.1 547617

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0008836 GO:0009089 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008836

diaminopimelate decarboxylase activity

Details: 
Catalysis of the reaction: meso-2,6-diaminopimelate + H(+) = L-lysine + CO(2).
GO Category: 
MF

GO:0009089

lysine biosynthetic process via diaminopimelate

Details: 
The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
GO Category: 
BP

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