20625 DUF4602Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20625	chr_1	DUF4602	458438	459224	-	DUF4602

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449130	Thaps20625.1, Thaps20625.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0318

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0100	0.39	4.5 0.21

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9299	35963 CE4_SF superfamily 0.9013	1357 FKBP_C 0.8957	36650 hypothetical protein 0.8951	22690 RRM_Nop6 0.8916	7838 hypothetical protein 0.8792
25365 hypothetical protein 0.8758	37705 DUF4110 0.8681	21973 G-patch 0.8671	21959 hypothetical protein 0.866

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF4602 superfamily		Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins in...	-	83.1485	3.06E-20	41 - 156	superfamily	259507
DUF4602 superfamily		Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins in...	-	83.1485	3.06E-20	41 - 156	superfamily	259507

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_31841	PHATRDRAFT_31841	234889	134266	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments