21098 RhomboidThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21098	chr_2	Rhomboid	66795	70474	+	Rhomboid

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445078	Thaps21098.1, Thaps21098.4, Thaps21098.3, Thaps21098.5, Thaps21098.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0111

Most Highly Correlated Transcripts

4524 DHQS 0.9146	41655 Chloroa_b-bind 0.897	38707 Aldolase_Class_I superfamily 0.8842	39941 PRK13357 0.877	39864 DEXDc superfamily 0.8756	38964 Chorismate_synthase 0.8744
22547 hypothetical protein 0.8739	13393 PLN02321 0.873	5105 hypothetical protein 0.8723	261400 NA 0.87

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Rhomboid		Rhomboid family; This family contains integral membrane proteins that are related to Drosophila...	cl11446	141.207	1.46E-38	566 - 710	specific	250801
Rhomboid superfamily		Rhomboid family; This family contains integral membrane proteins that are related to Drosophila...	-	141.207	1.46E-38	566 - 710	superfamily	264372

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47107	PHATRDRAFT_47107	187547	194424	309555	Cre16.g690900.t1.2	AT1G25290.2	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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