2118 Ptr
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2118 chr_2 Ptr 213914 217101 - Ptr

Synonyms

NCBI ID Ensembl Genomes exon ID
7442201 Thaps2118.1, Thaps2118.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0397

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

24340

MFS
0.905

bd706

(bd706) NA
0.8773

263610

COG3899
0.8764

4445

hypothetical protein
0.8746

262157

E1_like_apg7
0.856

20907

hypothetical protein
0.8524

7121

DUF3684 superfamily
0.8519

12859

VacB
0.8511

25600

hypothetical protein
0.8503

23754

hypothetical protein
0.8497

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_M16 superfamily Insulinase (Peptidase family M16); Insulinase (Peptidase family M16). - 73.4988 6.79E-15 154 - 311 superfamily 250047
Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification,... - 186.811 8.36E-49 140 - 896 multi-dom 223956

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47985 PHATRDRAFT_47985 248059 3378 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0004231 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0004231

NA

Details: 
NA
GO Category: 
NA

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