21480 Choline_transpo superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21480	chr_2	Choline_transpo superfamily	1967328	1969958	-	Choline_transpo superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452337	Thaps21480.2, Thaps21480.1, Thaps21480.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0301

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0017	0.42

Most Highly Correlated Transcripts

263610 COG3899 0.87	4047 hypothetical protein 0.8616	8762 SNF2_N 0.8578	263599 COG3899 0.8556	21695 hypothetical protein 0.8374	22218 hypothetical protein 0.8362
5840 hypothetical protein 0.8303	5660 hypothetical protein 0.8269	11072 hypothetical protein 0.8264	24063 COG3899 0.8253

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Choline_transpo superfamily		Plasma-membrane choline transporter; This family represents a high-affinity plasma-membrane choline...	-	138.888	4.36E-36	429 - 749	superfamily	252644

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_36848	PHATR_36848	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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