21633 ccl1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21633	chr_3	ccl1	340093	341618	-	ccl1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444008	Thaps21633.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0474

Most Highly Correlated Transcripts

25442 hypothetical protein 0.901	20799 LUC7 0.8914	269169 Beach 0.88	262675 AAA 0.8786	21700 hypothetical protein 0.8707	12836 EEP superfamily 0.8693
21220 KU superfamily 0.8691	13448 Sec1 0.867	24109 hypothetical protein 0.8651	7627 SPRY 0.8644

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ccl1		cyclin ccl1; All proteins in this family for which functions are known are cyclins that are...	-	90.6637	1.13E-20	122 - 333	multi-dom	129660

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48763	PHATRDRAFT_48763	219135	201863	Not available	Cre14.g632783.t1.1	AT5G27620.1	346765

KEGG

KEGG description	KEGG Pathway
Nucleotide excision repair	map03420

GO Terms

Not available -

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