22036 ElaC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22036 chr_3 ElaC 2330287 2332848 + ElaC

Synonyms

NCBI ID Ensembl Genomes exon ID
7443830 Thaps22036.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0223

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0230
 0.24

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.9398

bd1709

(bd1709) NA
0.9385

21929

COG0116
0.9303

264632

COG0826
0.9109

25120

U3_assoc_6 superfamily
0.9053

268486

Glyco_transf_22 superfamily
0.904

32158

NOC3
0.9036

22441

hypothetical protein
0.9034

4372

hypothetical protein
0.9017

13378

PRK13762
0.9011

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] cl00446 154.88 8.22E-42 514 - 785 specific 224155
Lactamase_B superfamily Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily. - 85.7305 2.50E-18 25 - 332 superfamily 260426
Lactamase_B superfamily Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily. - 85.7305 2.50E-18 25 - 332 superfamily 260426

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47120 PHATRDRAFT_47120 201840 253636 452384 Cre01.g039900.t1.2 AT1G52160.1 532801

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0042781 -

GO:0042781

3'-tRNA processing endoribonuclease activity

Details: 
Catalysis of the endonucleolytic cleavage of RNA, removing extra 3' nucleotides from tRNA precursor, generating 3' termini of tRNAs. A 3'-hydroxy group is left at the tRNA terminus and a 5'-phosphoryl group is left at the trailer molecule.
GO Category: 
MF

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