22070 SRPBCC superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22070	chr_4	SRPBCC superfamily	108212	111604	-	SRPBCC superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442033	Thaps22070.2, Thaps22070.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0465

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0158	0.37	0.012 380

Most Highly Correlated Transcripts

bd1949 (bd1949) NA 0.886	bd1777 (bd1777) NA 0.8747	21861 hypothetical protein 0.8549	2837 hypothetical protein 0.8434	bd392 (bd392) DEXDc 0.8426	bd624 (bd624) Glyco_transf_34 superfamily 0.8412
24303 DUF647 superfamily 0.8344	bd446 (bd446) HrpA 0.8326	7973 hypothetical protein 0.8281	5915 hypothetical protein 0.8231

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SRPBCC superfamily		START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; SRPBCC domains...	-	149.373	2.16E-40	225 - 518	superfamily	265438

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46270	PHATRDRAFT_46270	179309	289925	Not available	Not available	Not available	479879

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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