22385 SAC3_GANPThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22385	chr_4	SAC3_GANP	1677355	1679651	+	SAC3_GANP

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451918	Thaps22385.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0318

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0229	0.40	120 270

Most Highly Correlated Transcripts

4108 hypothetical protein 0.987	264498 PRK00142 0.9201	268136 COG1054 0.9083	21973 G-patch 0.9072	25436 hypothetical protein 0.9009	38361 HMGB-UBF_HMG-box 0.8993
269997 COG1112 0.8944	22690 RRM_Nop6 0.8943	261324 PLN02724 0.8927	32395 RNA_pol 0.8927

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SAC3_GANP		SAC3/GANP/Nin1/mts3/eIF-3 p25 family; This large family includes diverse proteins involved in large...	-	176.341	4.17E-51	392 - 641	multi-dom	251923

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46213	PHATRDRAFT_46213	272563	237550	449967	Cre06.g258100.t1.1	AT2G39340.1	492999

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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