38361 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38361 chr_19c_29 HMGB-UBF_HMG-box 263692 265669 + HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7451855 Thaps38361.1, Thaps38361.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0329

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0210
 0.31

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.9107

bd1877

(bd1877) NA
0.9003

22385

SAC3_GANP
0.8993

267979

HCO3_cotransp superfamily
0.8992

264498

PRK00142
0.8972

8676

alpha-crystallin-Hsps_p23-like superfamily
0.8875

37928

PLN03238
0.8826

3998

PLN02485
0.8815

13308

PLN02948
0.8804

26393

(ubc1) UBCc
0.8794

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 64.1861 1.05E-12 467 - 535 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 64.1861 1.05E-12 467 - 535 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
7695 Not available 241890 318558 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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