22405 Delta6-FADS-like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22405 chr_4 Delta6-FADS-like 1800377 1802402 + Delta6-FADS-like

Synonyms

NCBI ID Ensembl Genomes exon ID
7443753 Thaps22405.3, Thaps22405.1, Thaps22405.2, Thaps22405.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0065

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0133
 0.40

Most Highly Correlated Transcripts

bd1387

(bd1387) psbE
0.957

bd208

(bd208) DUF3529
0.9494

bd1306

(bd1306) NA
0.949

bd1304

(bd1304) Ycf4
0.9485

bd2073

(bd2073) psbB
0.946

bd1380

(bd1380) ycf39
0.9418

bd1645

(bd1645) tpt
0.9413

bd1403

(bd1403) NA
0.9343

bd467

(bd467) Cytochrome_b_N
0.9326

bd466

(bd466) cytochrome_b_C
0.9246

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes:... cl00615 142.781 1.44E-39 214 - 449 specific 239583
Membrane-FADS-like superfamily The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane... - 142.781 1.44E-39 214 - 449 superfamily 260534

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50443 PHATRDRAFT_50443 207407 193793 417285 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016491 GO:0006636 GO:0016020 GO:0016717 GO:0016213 -

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0006636

unsaturated fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016717

oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.
GO Category: 
MF

GO:0016213

linoleoyl-CoA desaturase activity

Details: 
Catalysis of the reaction: linoleoyl-CoA + reduced acceptor + O2 = gamma-linolenoyl-CoA + acceptor + 2 H2O.
GO Category: 
MF

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