22854 PTS_2-RNA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22854 chr_5 PTS_2-RNA 1738917 1739943 - PTS_2-RNA

Synonyms

NCBI ID Ensembl Genomes exon ID
7448196 Thaps22854.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0228

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0259
 0.35

Most Highly Correlated Transcripts

269798

hypothetical protein
0.8827

3314

hypothetical protein
0.8794

40798

IF4E
0.874

30862

PTZ00368
0.8734

21910

hypothetical protein
0.8705

263046

HA
0.8634

268136

COG1054
0.8628

5692

Peptidase_C15 superfamily
0.8598

11147

HP_PGM_like
0.8597

22627

hypothetical protein
0.8578

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PTS_2-RNA RNA 2'-phosphotransferase, Tpt1 / KptA family; Tpt1 catalyses the last step of tRNA... cl19470 172.342 1.60E-52 55 - 292 specific 250941
PTS_2-RNA superfamily RNA 2'-phosphotransferase, Tpt1 / KptA family; Tpt1 catalyses the last step of tRNA... - 172.342 1.60E-52 55 - 292 superfamily 267823

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21228 PHATRDRAFT_21228 162092 296640 461661 Not available AT2G45330.1 516787

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006388 GO:0016772 -

GO:0006388

tRNA splicing, via endonucleolytic cleavage and ligation

Details: 
Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons.
GO Category: 
BP

GO:0016772

transferase activity, transferring phosphorus-containing groups

Details: 
Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
GO Category: 
MF

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