40798 IF4E
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40798 chr_5 IF4E 1618587 1619633 - IF4E

Synonyms

NCBI ID Ensembl Genomes exon ID
7445186 Thaps40798.1, Thaps40798.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0225

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.9203

37497

cysE
0.9168

22322

PHear_NECAP
0.9143

262555

AAT_I superfamily
0.909

1676

hypothetical protein
0.9038

40200

TRX_reduct
0.9033

22465

PTZ00169
0.903

21910

hypothetical protein
0.8999

19158

GRX_PICOT_like
0.8998

22686

hypothetical protein
0.8969

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF4E Eukaryotic initiation factor 4E; Eukaryotic initiation factor 4E. cl02106 213.615 1.94E-70 7 - 172 specific 250771
IF4E superfamily Eukaryotic initiation factor 4E; Eukaryotic initiation factor 4E. - 213.615 1.94E-70 7 - 172 superfamily 261179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9829 PHATRDRAFT_9829 272882 304216 Not available Cre03.g199900.t1.2 AT4G18040.1 566314

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003723 GO:0003743 GO:0005737 GO:0006413 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

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