22965 SrmB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22965 chr_6 SrmB 212172 213847 + SrmB

Synonyms

NCBI ID Ensembl Genomes exon ID
7448381 Thaps22965.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0179
 0.28

Most Highly Correlated Transcripts

13308

PLN02948
0.9476

34596

WD40
0.9404

21698

hypothetical protein
0.9348

30980

EngA2
0.9277

23812

TrmA
0.9209

22448

hypothetical protein
0.9179

24709

(NTT6) TLC superfamily
0.9175

267979

HCO3_cotransp superfamily
0.916

8995

hypothetical protein
0.9116

37705

DUF4110
0.9105

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 79.204 1.79E-17 323 - 504 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 79.204 1.79E-17 323 - 504 superfamily 238034
DEAD DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases... cl17251 109.26 7.44E-28 39 - 199 specific 249732
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 109.26 7.44E-28 39 - 199 superfamily 266587
SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /... - 191.542 5.42E-54 3 - 524 multi-dom 223587

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25184 PHATRDRAFT_25184 257524 228634 Not available Not available AT5G19210.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 GO:0000810 GO:0004787 GO:0008722 GO:0008758 GO:0008796 GO:0008828 GO:0016462 GO:0016818 GO:0019176 GO:0019177 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0000810

diacylglycerol diphosphate phosphatase activity

Details: 
Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.
GO Category: 
MF

GO:0004787

thiamine-pyrophosphatase activity

Details: 
Catalysis of the reaction: TDP + H2O = TMP + phosphate.
GO Category: 
MF

GO:0008722

NA

Details: 
NA
GO Category: 
NA

GO:0008758

UDP-2,3-diacylglucosamine hydrolase activity

Details: 
Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP.
GO Category: 
MF

GO:0008796

bis(5'-nucleosyl)-tetraphosphatase activity

Details: 
Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides.
GO Category: 
MF

GO:0008828

dATP pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate.
GO Category: 
MF

GO:0016462

pyrophosphatase activity

Details: 
Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.
GO Category: 
MF

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Details: 
Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
GO Category: 
MF

GO:0019176

dihydroneopterin monophosphate phosphatase activity

Details: 
Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate.
GO Category: 
MF

GO:0019177

dihydroneopterin triphosphate pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.
GO Category: 
MF

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