23362 NT_PAP_TUTaseThalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23362	chr_7	NT_PAP_TUTase	334859	337520	-	NT_PAP_TUTase

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446193	Thaps23362.2, Thaps23362.3, Thaps23362.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0326

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0076	0.36	820 4800

Most Highly Correlated Transcripts

bd877 (bd877) NA 0.9368	bd690 (bd690) NA 0.9326	bd1934 (bd1934) NA 0.922	bd1840 (bd1840) NA 0.9118	bd1756 (bd1756) NA 0.9033	bd1839 (bd1839) NA 0.9018
bd643 (bd643) NA 0.8841	bd415 (bd415) arom_aa_hydroxylase superfamily 0.8813	261601 PA14 0.8777	17310 HP_PGM_like 0.8676

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NT_PAP_TUTase	Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; Poly(...	cl11966	72.9751	3.90E-15	180 - 356	specific	143392
Rel-Spo_like superfamily	RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily...	-	72.9751	3.90E-15	180 - 356	superfamily	264491
PAP_assoc superfamily	Cid1 family poly A polymerase; This domain is found in poly(A) polymerases and has been shown to...	-	67.2113	9.44E-14	419 - 480	superfamily	252188
PAP_assoc superfamily	Cid1 family poly A polymerase; This domain is found in poly(A) polymerases and has been shown to...	-	67.2113	9.44E-14	419 - 480	superfamily	252188
BTB superfamily	BTB/POZ domain; The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is...	-	64.8926	1.26E-12	580 - 659	superfamily	261320

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50322	PHATRDRAFT_50322	148780	294768	Not available	Cre17.g720750.t1.2	AT5G53770.1	343641

KEGG

KEGG description	KEGG Pathway
RNA degradation	map03018

GO Terms

GO:0003676 GO:0016779 GO:0005249 GO:0006813 GO:0008076 GO:0016020 GO:0003887 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0003676

nucleic acid binding

Details:

Interacting selectively and non-covalently with any nucleic acid.

GO Category:

GO:0016779

nucleotidyltransferase activity

Details:

Catalysis of the transfer of a nucleotidyl group to a reactant.

GO Category:

GO:0005249

voltage-gated potassium channel activity

Details:

Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.

GO Category:

GO:0006813

potassium ion transport

Details:

The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

GO Category:

GO:0008076

voltage-gated potassium channel complex

Details:

A protein complex that forms a transmembrane channel through which potassium ions may cross a cell membrane in response to changes in membrane potential.

GO Category:

GO:0016020

membrane

Details:

Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.

GO Category:

GO:0003887

DNA-directed DNA polymerase activity

Details:

Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.

GO Category:

23362 NT_PAP_TUTase
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Motif-Guided Biclusters

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003676

GO:0016779

GO:0005249

GO:0006813

GO:0008076

GO:0016020

GO:0003887

GO:0003889

GO:0003890

GO:0003891

GO:0003893

GO:0003894

GO:0003895

GO:0015999

GO:0016000

GO:0016448

GO:0016449

GO:0016450

GO:0016451

GO:0016452

GO:0019984

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