23539 OligomerizationThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23539	chr_7	Oligomerization	1352666	1354712	-	Oligomerization

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447120	Thaps23539.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0222

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0165	0.36	0.0014 0.015

Most Highly Correlated Transcripts

bd1877 (bd1877) NA 0.9218	262018 hypothetical protein 0.9207	268598 COG1094 0.9174	23737 tRNA_m1G_MT superfamily 0.9114	24439 hypothetical protein 0.9076	34413 RRM_ABT1_like 0.9038
29705 18S_RNA_Rcl1p 0.8949	21837 HSP33 0.8946	25139 RRN3 superfamily 0.894	22498 DEXDc superfamily 0.8939

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Oligomerization		Oligomerization domain; In yeasts, this domain is required for the oligomerization of ATP synthase...	cl00519	68.6878	5.81E-14	447 - 581	specific	251278
Oligomerization superfamily		Oligomerization domain; In yeasts, this domain is required for the oligomerization of ATP synthase...	-	68.6878	5.81E-14	447 - 581	superfamily	260473

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42807	PHATRDRAFT_42807	256997	293492	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments