23806 Nuc_sug_transp
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23806 chr_8 Nuc_sug_transp 822696 825308 - Nuc_sug_transp

Synonyms

NCBI ID Ensembl Genomes exon ID
7449831 Thaps23806.1, Thaps23806.4, Thaps23806.3, Thaps23806.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0429

Most Highly Correlated Transcripts

37118

FeThRed_B
0.9483

268443

SAICAR_synt_Sc
0.9224

269624

TIM_phosphate_binding superfamily
0.916

35136

NA
0.9102

270222

0.9093

19158

GRX_PICOT_like
0.9074

16114

PLN02350
0.9014

31862

PP2Cc
0.8996

887

Bromodomain superfamily
0.8944

21052

hypothetical protein
0.8887

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
nst superfamily UDP-galactose transporter; The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-... - 135.175 6.57E-37 147 - 402 superfamily 129885
Nuc_sug_transp Nucleotide-sugar transporter; This family of membrane proteins transport nucleotide sugars from the... - 241.439 7.36E-77 126 - 395 multi-dom 252406

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22921 PHATRDRAFT_22921 140333 321365 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005338 GO:0015780 GO:0016021 GO:0000139 GO:0005351 GO:0008643 -

GO:0005338

nucleotide-sugar transmembrane transporter activity

Details: 
Catalysis of the transfer of a nucleotide-sugar from one side of the membrane to the other. A nucleotide-sugar is any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
MF

GO:0015780

nucleotide-sugar transport

Details: 
The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0000139

Golgi membrane

Details: 
The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO Category: 
CC

GO:0005351

sugar:hydrogen symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in).
GO Category: 
MF

GO:0008643

carbohydrate transport

Details: 
The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
GO Category: 
BP

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