23862 Syo1_like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23862	chr_8	Syo1_like superfamily	1071995	1074873	-	Syo1_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444940	Thaps23862.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0166	0.18	30 800

Most Highly Correlated Transcripts

21082 Cupin_8 superfamily 0.9545	20985 COG5593 0.9515	32374 TPR 0.9495	24590 DUF663 0.9406	4624 SrmB 0.9393	7265 PIN_SF superfamily 0.9376
268689 RRM6_RBM19_RRM5_MRD1 0.9371	6250 reductase 0.9355	25129 hypothetical protein 0.9353	262722 DEXDc superfamily 0.9325

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Syo1_like superfamily		Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes...	-	71.184	5.43E-13	585 - 940	superfamily	240521

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
16136	PHATRDRAFT_49210	PHATRDRAFT_49210	243079	254525	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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