260852 PRK04194Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
260852	chr_1	PRK04194	936469	938565	-	PRK04194

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445267	Thaps260852.2, Thaps260852.3, Thaps260852.5, Thaps260852.6, Thaps260852.1, Thaps260852.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0323

Most Highly Correlated Transcripts

267979 HCO3_cotransp superfamily 0.902	40200 TRX_reduct 0.895	24604 hypothetical protein 0.8898	5309 Methyltransf_31 0.8892	6178 zf-UBP 0.8877	23769 hypothetical protein 0.8858
39592 (NRT3) 2A0108 0.8847	23415 hypothetical protein 0.8843	25214 PRK02224 0.8831	23714 hypothetical protein 0.8804

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PRK04194		hypothetical protein; Provisional	cl03398	362.563	1.58E-121	10 - 453	specific	235249
DUF111 superfamily		Protein of unknown function DUF111; This prokaryotic family has no known function.	-	362.563	1.58E-121	10 - 453	superfamily	261722

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_46843	PHATR_46843	225224	185187	Not available	Not available	Not available	344241

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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