6178 zf-UBP
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6178 chr_6 zf-UBP 905915 908086 - zf-UBP

Synonyms

NCBI ID Ensembl Genomes exon ID
7445937 Thaps6178.2, Thaps6178.1, Thaps6178.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0044

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9464

21090

hypothetical protein
0.8894

260852

PRK04194
0.8877

5309

Methyltransf_31
0.8845

23415

hypothetical protein
0.8835

6457

DUF21
0.8828

267979

HCO3_cotransp superfamily
0.8823

40200

TRX_reduct
0.882

23243

hypothetical protein
0.8777

6095

hypothetical protein
0.8753

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
zf-UBP Zn-finger in ubiquitin-hydrolases and other protein; Zn-finger in ubiquitin-hydrolases and other... cl09957 69.2623 1.97E-14 424 - 507 specific 251121
zf-UBP superfamily Zn-finger in ubiquitin-hydrolases and other protein; Zn-finger in ubiquitin-hydrolases and other... - 69.2623 1.97E-14 424 - 507 superfamily 263936

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_36079 PHATRDRAFT_36079 Not available 212263 259510 Cre10.g454400.t1.1 AT2G26000.2 470756

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 GO:0008766 GO:0016881 GO:0018169 -

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

Add comment

Log in to post comments