261368 ABC_ATPase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261368 chr_2 ABC_ATPase superfamily 990967 993692 + ABC_ATPase superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0436

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0084
 0.43

Most Highly Correlated Transcripts

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8231

bd1841

(bd1841) CAP10 superfamily
0.805

bd410

(bd410) HNHc
0.7709

bd833

(bd833) NA
0.7658

24733

COG3899
0.7618

bd1756

(bd1756) NA
0.7612

bd1954

(bd1954) NA
0.7592

bd1845

(bd1845) NA
0.7505

bd1839

(bd1839) NA
0.7476

bd764

(bd764) NA
0.7423

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 249.408 4.55E-77 494 - 727 superfamily 266551
MutS_III MutS domain III; This domain is found in proteins of the MutS family (DNA mismatch repair proteins... cl17822 146.805 2.66E-39 172 - 484 specific 253074
MutS_III superfamily MutS domain III; This domain is found in proteins of the MutS family (DNA mismatch repair proteins... - 146.805 2.66E-39 172 - 484 superfamily 266862
MUTSd DNA-binding domain of DNA mismatch repair MUTS family; DNA-binding domain of DNA mismatch repair... - 107.77 1.05E-25 191 - 501 multi-dom 214710

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51916 PHATRDRAFT_51916 253011 259109 Not available Not available AT4G17380.1 487593

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0001584 GO:0007186 GO:0016021 GO:0003684 GO:0005524 GO:0006298 GO:0006259 -

GO:0001584

NA

Details: 
NA
GO Category: 
NA

GO:0007186

G-protein coupled receptor signaling pathway

Details: 
A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0003684

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006298

mismatch repair

Details: 
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO Category: 
BP

GO:0006259

DNA metabolic process

Details: 
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO Category: 
BP

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