261756 pepNThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
261756	chr_3	pepN	819684	822516	+	pepN

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444752	Thaps261756.2, Thaps261756.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0207

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0117	0.49	7400 44000

Most Highly Correlated Transcripts

34876 (COP1) Coatomer_WDAD 0.8955	1912 2OG-FeII_Oxy_3 superfamily 0.8925	40868 EMP70 superfamily 0.8894	1820 SET 0.8891	268650 (APB2) PTZ00429 0.886	24285 hypothetical protein 0.8856
9166 hypothetical protein 0.8817	4353 O-FucT_like 0.8793	5659 hypothetical protein 0.8755	27986 LMBR1 superfamily 0.8752

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GluZincin superfamily		Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4...	-	1173.96	0	57 - 939	superfamily	265459
pepN		aminopeptidase N; Provisional	-	1268.9	0	49 - 939	multi-dom	237585

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_29309	PHATRDRAFT_29309	174712	318729	Not available	Cre17.g736650.t1.2	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

GO:0004179 GO:0006508 GO:0008237 GO:0008270 -

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