34876 (COP1) Coatomer_WDAD
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
34876 chr_6 (COP1) Coatomer_WDAD 1052776 1057212 + Coatomer_WDAD
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0171
Normalized Mean Residue
Thaps_bicluster_0202
0.30
(APB2) PTZ00429
0.9087
EMP70 superfamily
0.9007
pepN
0.8955
hypothetical protein
0.8909
EEP superfamily
0.8849
hypothetical protein
0.884
2OG-FeII_Oxy_3 superfamily
0.8805
S2P-M50_like_2
0.878
hypothetical protein
0.8768
Adaptin_N
0.8758
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 253.797 7.66E-76 19 - 336 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 253.797 7.66E-76 19 - 336 superfamily 238121
COPI_C superfamily Coatomer (COPI) alpha subunit C-terminus; This family represents the C-terminus (approximately 500... - 250.944 3.28E-73 954 - 1266 superfamily 253989
Coatomer_WDAD Coatomer WD associated region; This region is composed of WD40 repeats. - 383.095 1.83E-120 357 - 813 multi-dom 252340
COG2319 FOG: WD40 repeat [General function prediction only] - 156.402 3.11E-40 16 - 335 multi-dom 225201
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21929 PHATRDRAFT_21929 226883 64445 419523 Cre13.g565850.t1.1 AT1G62020.1 545018
KEGG description KEGG Pathway
Not available Not available
GO:0001584 GO:0007186 GO:0016021 GO:0006886 GO:0008565 GO:0030126 -

NA

Details: 
NA
GO Category: 
NA

G-protein coupled receptor signaling pathway

Details: 
A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription.
GO Category: 
BP

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

protein transporter activity

Details: 
Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO Category: 
MF

COPI vesicle coat

Details: 
One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state.
GO Category: 
CC
Log in to post comments