1820 SETThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1820	chr_1	SET	2504323	2506227	+	SET

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447645	Thaps1820.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0205

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0246	0.41	0.00038 0.0025

Most Highly Correlated Transcripts

268650 (APB2) PTZ00429 0.8988	25677 MgtE superfamily 0.895	270222 0.8946	261756 pepN 0.8891	1912 2OG-FeII_Oxy_3 superfamily 0.8869	4353 O-FucT_like 0.8866
16295 FBPase 0.8861	43150 PolyPPase_VTC4_like 0.8855	27986 LMBR1 superfamily 0.8849	33725 (RPN11) MPN_RPN11_CSN5 0.8836

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SET		SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on...	cl02566	62.7371	1.05E-11	297 - 444	specific	214614
SET superfamily		SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be...	-	62.7371	1.05E-11	297 - 444	superfamily	261347

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42606	PHATRDRAFT_42606	212770	238495	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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