262396 Fe_bilin_red superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262396 chr_5 Fe_bilin_red superfamily 213024 214123 + Fe_bilin_red superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447270 Thaps262396.2, Thaps262396.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0297

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0028
 0.44

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.8934

36007

Aldolase_II superfamily
0.8792

6028

NA
0.8696

36476

WD40 superfamily
0.8642

1083

MATE_eukaryotic
0.8642

5270

Methyltransf_16 superfamily
0.8639

1418

cyclophilin
0.861

262283

AFD_class_I superfamily
0.8582

38707

Aldolase_Class_I superfamily
0.858

269624

TIM_phosphate_binding superfamily
0.8553

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Fe_bilin_red superfamily Ferredoxin-dependent bilin reductase; This family consists of several different but closely related... - 167.334 1.71E-49 163 - 355 superfamily 263512

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45446 PHATRDRAFT_45446 269134 194685 245098 Not available AT3G09150.3 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0010024 GO:0016636 GO:0050897 GO:0050619 -

GO:0010024

phytochromobilin biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of phytochromobilin, which involves the oxidative cleavage of heme by a heme oxygenase(HO) to form biliverdin IX alpha.
GO Category: 
BP

GO:0016636

oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces an iron-sulfur protein.
GO Category: 
MF

GO:0050897

cobalt ion binding

Details: 
Interacting selectively and non-covalently with a cobalt (Co) ion.
GO Category: 
MF

GO:0050619

phytochromobilin:ferredoxin oxidoreductase activity

Details: 
Catalysis of the reaction: (3Z)-phytochromobilin + oxidized ferredoxin = biliverdin IXa + reduced ferredoxin.
GO Category: 
MF

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