263118 ABC_ATPase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263118 chr_7 ABC_ATPase superfamily 616176 618014 + ABC_ATPase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449182 Thaps263118.2, Thaps263118.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0233

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0194
 0.41

Most Highly Correlated Transcripts

19913

ybbN
0.8703

33699

TRX_family
0.8566

264481

Gly_transf_sug
0.8476

10873

NA
0.8298

32713

DnaJ
0.8291

11371

hypothetical protein
0.8236

36407

PRK09427
0.8166

1704

ArsA_ATPase
0.8084

261357

NAD_binding_8 superfamily
0.8036

262615

Syja_N
0.8024

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 123.385 4.46E-32 30 - 218 superfamily 266551
Permease superfamily Permease; This domain functions as a permease. In a hypothetical protein from Neisseria it is... - 83.2337 3.53E-18 380 - 596 superfamily 260470
nickel_nikD nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit... - 80.1052 4.37E-17 30 - 246 multi-dom 131817

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_5954 PHATRDRAFT_5954 204625 301562 222339 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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