35501 HELICcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
35501	chr_7	HELICc	192775	193982	+	HELICc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446164	Thaps35501.1, Thaps35501.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0089

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0001	0.47	10000 120

Most Highly Correlated Transcripts

263947 SNF2_N 0.9438	262854 CBS_pair superfamily 0.9296	12602 MYSc 0.9294	262607 WD40 superfamily 0.9277	33225 MYSc 0.9271	263859 GH18_chitinase-like superfamily 0.9238
15537 KISc 0.9233	268454 CAP_ED 0.9226	2958 PROCN 0.9201	5961 Nucleotid_trans superfamily 0.9191

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	106.938	5.02E-28	231 - 363	superfamily	238034
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	106.938	5.02E-28	231 - 363	superfamily	238034

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_13093	PHATRDRAFT_13093	188068	199531	75883	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003677 GO:0005524 GO:0003676 GO:0004386 -

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