26726 (ITS2) PLN02843
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26726 chr_1 (ITS2) PLN02843 1791926 1795251 + PLN02843

Synonyms

NCBI ID Ensembl Genomes exon ID
7445294 Thaps26726.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0235
 0.25

Most Highly Correlated Transcripts

40034

thrS
0.9217

6610

hypothetical protein
0.9132

40028

PLN02286
0.9111

bd208

(bd208) DUF3529
0.9066

23462

hypothetical protein
0.8995

bd1652

(bd1652) ABC_ATPase superfamily
0.8974

261633

(CTS2) cysS
0.8967

21858

PRK11819
0.8937

bd687

(bd687) NA
0.8922

6028

NA
0.8897

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IleRS_core catalytic core domain of isoleucyl-tRNA synthetases; Isoleucine amino-acyl tRNA synthetases (IleRS... cl00015 292.984 9.78E-90 507 - 751 specific 173909
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 217.87 5.99E-63 127 - 266 superfamily 260139
Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases; This... cl12020 251.29 4.77E-77 751 - 930 specific 153414
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 251.29 4.77E-77 751 - 930 superfamily 264512
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 217.87 5.99E-63 127 - 266 superfamily 260139
PLN02843 isoleucyl-tRNA synthetase - 1756.59 0 93 - 1073 multi-dom 215452

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17198 PHATRDRAFT_17198 276205 184346 65960 Cre16.g689871.t1.1 AT5G49030.2 511967

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004822 GO:0006428 GO:0008270 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004822

isoleucine-tRNA ligase activity

Details: 
Catalysis of the reaction: L-isoleucine + ATP + tRNA(Ile) = L-isoleucyl-tRNA(Ile) + AMP + diphosphate + 2 H(+).
GO Category: 
MF

GO:0006428

isoleucyl-tRNA aminoacylation

Details: 
The process of coupling isoleucine to isoleucyl-tRNA, catalyzed by isoleucyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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