268644 PRK11824
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268644 chr_4 PRK11824 570852 573361 - PRK11824

Synonyms

NCBI ID Ensembl Genomes exon ID
7447472 Thaps268644.3, Thaps268644.4, Thaps268644.1, Thaps268644.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0042

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0108
 0.45

Most Highly Correlated Transcripts

bd1652

(bd1652) ABC_ATPase superfamily
0.9484

bd211

(bd211) Maf_Ham1 superfamily
0.9437

bd1306

(bd1306) NA
0.9171

bd1403

(bd1403) NA
0.9093

bd208

(bd208) DUF3529
0.909

bd890

(bd890) NA
0.906

bd1863

(bd1863) NA
0.9048

bd529

(bd529) SNF2_N
0.9036

bd1387

(bd1387) psbE
0.8888

ThpsCp134

(rpl34) ribosomal protein L34
0.8871

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH_PNPase_2 Polyribonucleotide nucleotidyltransferase, repeat 2; Polyribonucleotide nucleotidyltransferase (... cl03114 408.088 3.79E-138 290 - 517 specific 206769
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 277.862 7.05E-88 4 - 198 superfamily 261591
PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a... cl17245 71.799 2.54E-15 526 - 586 specific 239086
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 71.799 2.54E-15 526 - 586 superfamily 266583
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 277.862 7.05E-88 4 - 198 superfamily 261591
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 61.7897 9.67E-12 597 - 674 superfamily 263921
PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional - 884.005 0 4 - 678 multi-dom 236995

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20608 PHATRDRAFT_20608 229766 318796 465631 Cre04.g214501.t1.1 AT3G03710.1 537335

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0000175 GO:0003723 GO:0006396 GO:0003676 GO:0000150 GO:0006310 GO:0004654 -

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0000150

recombinase activity

Details: 
Catalysis of the identification and base-pairing of homologous sequences between single-stranded DNA and double-stranded DNA.
GO Category: 
MF

GO:0006310

DNA recombination

Details: 
Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO Category: 
BP

GO:0004654

polyribonucleotide nucleotidyltransferase activity

Details: 
Catalysis of the reaction: ATP + RNA(n) = diphosphate + RNA(n+1).
GO Category: 
MF

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