269314 SMK-1 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269314	chr_7	SMK-1 superfamily	1920681	1925065	+	SMK-1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443410	Thaps269314.11, Thaps269314.8, Thaps269314.6, Thaps269314.7, Thaps269314.13, Thaps269314.5, Thaps269314.10, Thaps269314.14, Thaps269314.4, Thaps269314.9, Thaps269314.2, Thaps269314.1, Thaps269314.12, Thaps269314.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0361

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0084	0.43	0.00000000066 0.00000023

Most Highly Correlated Transcripts

24942 COG3899 0.8792	268746 SXM1 0.874	22764 hypothetical protein 0.8719	263599 COG3899 0.8714	8762 SNF2_N 0.8662	20232 AAA_12 0.8657
bd524 (bd524) NA 0.8637	bd1807 (bd1807) RRS1 superfamily 0.8622	262616 (MYB22) 0.8591	23096 hypothetical protein 0.859

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SMK-1 superfamily		Component of IIS longevity pathway SMK-1; SMK-1 is a component of the IIs longevity pathway which...	-	136.161	1.24E-36	161 - 353	superfamily	147119

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_40325	PHATRDRAFT_40325	209177	179113	467056	Cre17.g701300.t1.2	AT3G06670.1	299160

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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