269515 WD40Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269515	chr_10	WD40	654100	657508	+	WD40

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446863	Thaps269515.4, Thaps269515.5, Thaps269515.2, Thaps269515.1, Thaps269515.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0028

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0075	0.50	0.13 0.057

Most Highly Correlated Transcripts

16075 tpt 0.8777	4409 hypothetical protein 0.853	17707 NADB_Rossmann superfamily 0.8516	bd298 (bd298) ABM superfamily 0.8484	261882 Thioredoxin_like superfamily 0.8459	8872 hypothetical protein 0.8449
268592 VDE superfamily 0.8443	38608 SDR_a5 0.8438	4888 hypothetical protein 0.8406	7191 Aldo_ket_red 0.8325

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	183.305	1.91E-52	40 - 302	superfamily	238121
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	183.305	1.91E-52	40 - 302	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	127.512	1.40E-31	31 - 305	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50228	PHATRDRAFT_50228	223996	240729	468702	Cre12.g526950.t1.1	AT5G25150.1	354295

KEGG

KEGG description	KEGG Pathway
Basal transcription factors	map03022

GO Terms

Not available -

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