269863 PepO
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269863 chr_16a PepO 154636 156949 - PepO

Synonyms

NCBI ID Ensembl Genomes exon ID
7442498 Thaps269863.3, Thaps269863.2, Thaps269863.4, Thaps269863.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0127

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0080
 0.40

Most Highly Correlated Transcripts

261908

PLN02889
0.8944

13448

Sec1
0.8913

21229

hypothetical protein
0.8867

262960

TM_PBP1_branched-chain-AA_like superfamily
0.886

25162

hypothetical protein
0.8828

3803

hypothetical protein
0.8791

21220

KU superfamily
0.8786

11575

hypothetical protein
0.8782

5066

hypothetical protein
0.8781

5519

hypothetical protein
0.8781

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
M13 Peptidase family M13 includes neprilysin, endothelin-converting enzyme I; M13 family of... cl14813 736.035 0 5 - 643 specific 189000
GluZincin superfamily Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4... - 736.035 0 5 - 643 superfamily 265459
PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones] - 635.231 0 1 - 654 multi-dom 226118

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49707 PHATRDRAFT_49707 278212 179276 243348 Not available Not available 254804

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004245 GO:0006508 GO:0016020 GO:0008237 GO:0008270 GO:0016512 -

GO:0004245

NA

Details: 
NA
GO Category: 
NA

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016512

NA

Details: 
NA
GO Category: 
NA

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