270087 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
270087 chr_22 WD40 499230 500592 - WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7442840 Thaps270087.2, Thaps270087.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0430

Most Highly Correlated Transcripts

20763

CAF1
0.9245

29469

hypothetical protein
0.924

37962

LSm3
0.9191

33348

IGPD superfamily
0.9186

22596

PLN02296
0.9093

37642

nascent-polypeptide-associated complex alpha polypeptide-like protein
0.9076

31993

DUF3449
0.9043

11848

hypothetical protein
0.9035

17747

rplO
0.9032

31113

Cyt_c_Oxidase_VIb
0.9011

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 147.867 9.27E-42 22 - 324 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 147.867 9.27E-42 22 - 324 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 127.127 4.01E-33 34 - 326 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29212 PHATRDRAFT_29212 224311 251040 428205 Cre06.g302750.t1.2 AT1G15470.1 501150

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

Not available -

Add comment

Log in to post comments