28217 COG5406
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28217 chr_5 COG5406 412534 416682 - COG5406

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0087

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0176
 0.34

Most Highly Correlated Transcripts

bd624

(bd624) Glyco_transf_34 superfamily
0.9337

269123

MCM
0.9039

bd218

(bd218) Chloroa_b-bind superfamily
0.8987

bd1192

(bd1192) Acyl_ACP_Desat
0.892

bd1863

(bd1863) NA
0.8908

268553

POLBc_epsilon
0.8851

37523

S_TKc
0.8836

7798

hypothetical protein
0.8768

262574

(ssrp1) PH1_SSRP1-like
0.8758

bd1820

(bd1820) Fasciclin
0.8745

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
APP_MetAP superfamily A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as... - 205.273 1.21E-59 189 - 427 superfamily 260321
SPT16 superfamily FACT complex subunit (SPT16/CDC68); Proteins in this family are subunits the FACT complex. The FACT... - 175.508 2.85E-50 560 - 714 superfamily 254945
SPT16 superfamily FACT complex subunit (SPT16/CDC68); Proteins in this family are subunits the FACT complex. The FACT... - 175.508 2.85E-50 560 - 714 superfamily 254945
FACT-Spt16_Nlob superfamily FACT complex subunit SPT16 N-terminal lobe domain; The FACT or facilitator of chromatin... - 150.434 2.58E-41 4 - 177 superfamily 258963
FACT-Spt16_Nlob superfamily FACT complex subunit SPT16 N-terminal lobe domain; The FACT or facilitator of chromatin... - 150.434 2.58E-41 4 - 177 superfamily 258963
Rtt106 Histone chaperone Rttp106-like; This family includes Rttp106, a histone chaperone involved in... cl17171 86.8197 5.71E-20 842 - 923 specific 254846
PH-like superfamily Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and... - 86.8197 5.71E-20 842 - 923 superfamily 266526
COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and... - 599.69 0 1 - 1041 multi-dom 227693

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_18239 PHATRDRAFT_18239 186967 216453 Not available Cre12.g540076.t1.1 AT4G10710.1 542963

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments