268553 POLBc_epsilonThalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268553	chr_3	POLBc_epsilon	2023428	2032265	-	POLBc_epsilon

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445377	Thaps268553.6, Thaps268553.1, Thaps268553.5, Thaps268553.3, Thaps268553.8, Thaps268553.9, Thaps268553.7, Thaps268553.2, Thaps268553.4, Thaps268553.10

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0085

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0176	0.34	4.4 140000

Most Highly Correlated Transcripts

bd624 (bd624) Glyco_transf_34 superfamily 0.9418	bd718 (bd718) PRK10387 0.9277	bd1820 (bd1820) Fasciclin 0.926	bd1387 (bd1387) psbE 0.9253	bd218 (bd218) Chloroa_b-bind superfamily 0.924	2085 hypothetical protein 0.9181
bd1765 (bd1765) NA 0.9144	bd1078 (bd1078) NA 0.9115	3158 HepA 0.908	bd1893 (bd1893) NA 0.908

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
POLBc_epsilon	DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type...	cl10023	1080.78	0	439 - 1054	specific	99918
POLBc superfamily	DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding...	-	1080.78	0	439 - 1054	superfamily	245235
DNA_polB_epsilon_exo	DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B...	cl10012	386.615	8.85E-123	165 - 379	specific	99822
DnaQ_like_exo superfamily	DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like...	-	386.615	8.85E-123	165 - 379	superfamily	263941
DUF1744 superfamily	Domain of unknown function (DUF1744); This domain is found on the epsilon catalytic subunit of DNA...	-	262.247	1.57E-76	1437 - 1819	superfamily	254829
POLBc	DNA polymerase type-B family; DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA...	-	200.064	2.35E-54	164 - 771	multi-dom	214691

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_52678	PHATRDRAFT_52678	165693	298741	106805	Cre03.g179961.t1.1	AT2G27120.1	310598

KEGG

KEGG description	KEGG Pathway
Nucleotide excision repair	map03420

GO Terms

GO:0003887 GO:0006260 GO:0008408 GO:0000166 GO:0003677 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0003887

DNA-directed DNA polymerase activity

Details:

Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.

GO Category:

The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.

GO Category:

GO:0008408

3'-5' exonuclease activity

Details:

Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.

GO Category:

GO:0000166

nucleotide binding

Details:

Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

GO Category:

GO:0003677

DNA binding

Details:

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

GO Category:

268553 POLBc_epsilon
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Motif-Guided Biclusters

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003887

GO:0006260

GO:0008408

GO:0000166

GO:0003677

GO:0003889

GO:0003890

GO:0003891

GO:0003893

GO:0003894

GO:0003895

GO:0015999

GO:0016000

GO:0016448

GO:0016449

GO:0016450

GO:0016451

GO:0016452

GO:0019984

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